DIPY
Diffusion Imaging in Python - Leading open-source library for diffusion MRI analysis with 150+ contributors
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Serge Koudoro
Research Software Engineer
Open-source tools for neuroimaging & 3D, and expert help for the teams who depend on them
15+
years building scientific software
7
years of industrial R&D
150+
DIPY contributors
27
students mentored (GSoC)
Funding & affiliations Chan Zuckerberg Initiative GitHub Secure Open Source Fund Indiana University
I build open-source tools that make complex imaging and 3D algorithms accessible, fast and sustainable, and I help research and industry teams who depend on them ship reliable scientific software.
How I can help
Custom imaging & data pipelines
Diffusion MRI, microscopy/FLIM and 3D mesh pipelines, built to be reproducible and maintainable.
Performance optimization
Profiling and speeding up slow scientific code with Cython, SIMD and GPU, with benchmarks before and after.
File formats & data conversion
NIfTI, DICOM, mesh and proprietary formats, with mesh I/O built on polyxios.
Maintenance & support contracts
Priority fixes, code review and long-term support for the internal tools your team relies on.
Featured Work
FURY
Free Unified Rendering in Python - Advanced scientific visualization engine for high-dimensional data
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Polyxios
Fast, clean mesh I/O for Python - Read and write 3D mesh files across 27 formats with a single dependency
View Project →Neuroimaging Ecosystem
Active contributor to various neuroimaging tools including Nibabel, Nipype, and Brainlife platforms
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